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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5593006_5593636_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5593006 - 5593636
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTCTACAACA
Flanking Amino Acid:
DFLMCYSVAQGYFSHRETVN
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
76.3
33.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.3
0.5
1
67.4
37.9
Minor 5ss
40.6
-1
3.4
58.3
46.6
Minor BPS
58
0.25
1.8
73.68
37.7

Associated Gene:

Gene:
CASP6
Ensembl Gene ID:
ENSAPLG00000010415
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010862
5592157 - 5600443
8287