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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5596180_5596592_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5596180 - 5596592
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTAACAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTGTTTTAACA
Flanking Amino Acid:
TSADRHNLKRSLTDLGFEVR
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
70
0.45
1
64.4
40.5
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
69.8
0.62
1.3
75.16
36.6

Associated Gene:

Gene:
CASP6
Ensembl Gene ID:
ENSAPLG00000010415
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010862
5592157 - 5600443
8287