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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56059423_56064616_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56059423 - 56064616
Intron Length:
5194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTTC
5'SS Class:
major
3'SS Sequence:
TCTGCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TCTGCTTTTACA
Flanking Amino Acid:
KRRHEGELPSRLCGKTTIVG
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
76.1
34
Major BPS
68
0.45
1
57.8
39
Major PPT
85.3
0.79
0.8
79.4
32.6
Minor 5ss
47.2
-0.3
2.4
61.9
42.9
Minor BPS
60.6
0.33
1.8
70.62
41.9

Associated Gene:

Gene:
PCDH18
Ensembl Gene ID:
ENSAPLG00000014396
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015001
55835503 - 56064711
229209