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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5609616_5610960_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5609616 - 5610960
Intron Length:
1345

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
GTATATGAACTT
Flanking Amino Acid:
GRFFKKMACAGTYDGSIDSC
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.9
81.8
38.5
Major BPS
66.7
0.41
1
57.8
39
Major PPT
88.3
0.86
0.8
81.3
36.4
Minor 5ss
32.7
-2
4
47.8
47.9
Minor BPS
36.4
-0.9
2.3
53.65
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010778
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040999
5609148 - 5623116
13969
ENSAPLT00000011248
5609148 - 5623116
13969