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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56106342_56130859_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56106342 - 56130859
Intron Length:
24518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTACC
5'SS Class:
major
3'SS Sequence:
TTATGTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TCTACCTTATGT
Flanking Amino Acid:
FVTEEVENPEKNIPLAICIS
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
74.3
34.2
Major BPS
76.8
0.67
1
66
40.9
Major PPT
81.1
0.7
0.9
78.2
39.7
Minor 5ss
44.8
-0.6
2.4
55.6
35.3
Minor BPS
57.3
0.31
2
76.38
46

Associated Gene:

Gene:
SLC7A11
Ensembl Gene ID:
ENSAPLG00000014089
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018704
56091818 - 56151826
60009
ENSAPLT00000014691
56091818 - 56151826
60009