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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56136658_56144295_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56136658 - 56144295
Intron Length:
7638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTCCCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCTTTCTGACTT
Flanking Amino Acid:
AIKLITAVGITLVMVLNSTS
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
86.8
0.83
0.7
81.2
23.8
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
57.3
0.31
1.7
75.82
41.6

Associated Gene:

Gene:
SLC7A11
Ensembl Gene ID:
ENSAPLG00000014089
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014691
56091818 - 56151826
60009