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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56144412_56148498_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56144412 - 56148498
Intron Length:
4087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCACCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTTCTTACTT
Flanking Amino Acid:
VRVWVELLIIRPAATAVISL
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
81.8
31.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.4
0.55
0.8
67.2
33.9
Minor 5ss
36.7
-1.5
3.3
49.9
46.4
Minor BPS
68.6
0.66
1.6
82.85
39.2

Associated Gene:

Gene:
SLC7A11
Ensembl Gene ID:
ENSAPLG00000014089
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018704
56091818 - 56151826
60009
ENSAPLT00000014691
56091818 - 56151826
60009