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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5623591_5623776_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5623591 - 5623776
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
GCTCCTTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGATCCGTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
71.2
34.5
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
70
0.45
0.9
62.5
38.5
Minor 5ss
24.3
-3
3.1
29.7
43.1
Minor BPS
61.8
0.37
2
73.02
39

Associated Gene:

Gene:
GAR1
Ensembl Gene ID:
ENSAPLG00000010926
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011370
5623379 - 5773732
150354