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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5624246_5625099_F

Intron Information:

Intron Rank:
3
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
5624246 - 5625099
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
ACGAAACTCACAG|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TGTTCCTTAACG
Flanking Amino Acid:
DEIFGQLTDFYFSVKLSENM
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.2
51.5
40.4
Major BPS
74.1
0.6
1
69
38.9
Major PPT
56.6
0.15
1
46.8
39.7
Minor 5ss
94
1.48
0.8
90.4
20.7
Minor BPS
87.2
1.03
1.1
84.57
34.6

Associated Gene:

Gene:
GAR1
Ensembl Gene ID:
ENSAPLG00000010926
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011370
5623379 - 5773732
150354