About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5625160_5625531_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5625160 - 5625531
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGCCAA
5'SS Class:
major
3'SS Sequence:
TCTTTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTATTCTCAAAG
Flanking Amino Acid:
KASSFKKMQKFYIDPAKLLP
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
66.2
41.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
89.5
0.89
0.6
85
22.6
Minor 5ss
33.5
-1.9
2.9
39.2
46.1
Minor BPS
52.8
-0
1.7
58.71
42.3

Associated Gene:

Gene:
GAR1
Ensembl Gene ID:
ENSAPLG00000010926
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011370
5623379 - 5773732
150354