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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56265871_56324996_R

Intron Information:

Intron Rank:
145842
Intron Class:
major
Intron Phase:
Intron Coordinates:
56265871 - 56324996
Intron Length:
59126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTAATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CCCTCTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
83.9
0.76
0.8
78.3
33.7
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
70.5
0.72
1.3
74.65
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025848
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042544
56265563 - 56347628
82066