Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56324773_56324996_R

Intron Information:

Intron Rank:

145835

Intron Class:

major

Intron Phase:

Intron Coordinates:

56324773 - 56324996

Intron Length:

224

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAACTTTT

5'SS Class:

strong_major

3'SS Sequence:

ATTAAAACTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

CTGTACTTATTA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

1.1

87.9

29.3

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

0.38

61.1

43.9

Minor 5ss

55.9

0.2

2.5

39.7

Minor BPS

53.3

0.1

1.8

63.81

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025848

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020622

56324292 - 56347628

23337