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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56347826_56348499_F

Intron Information:

Intron Rank:
132047
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
56347826 - 56348499
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTGACACACACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AATCTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.8
34.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
58.5
0.19
1
50.7
37.3
Minor 5ss
44.3
-0.6
2.9
62.8
41.9
Minor BPS
71.8
0.76
1.1
80.75
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020935
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040061
56347270 - 56349014
1745