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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56383148_56383242_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56383148 - 56383242
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGGC
5'SS Class:
strong_major
3'SS Sequence:
CCCCTACTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
CCGCCCCTACTT
Flanking Amino Acid:
RVMQWNILAQALGEGKDNFV
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
70.6
41.4
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
75.6
0.58
0.8
68.7
30.5
Minor 5ss
36.7
-1.5
3.3
50.2
46.4
Minor BPS
45
-0.3
1.9
57.38
45.7

Associated Gene:

Gene:
NOCT
Ensembl Gene ID:
ENSAPLG00000026879
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023187
56381391 - 56384078
2688