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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5639481_5641677_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5639481 - 5641677
Intron Length:
2197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAG
U12 Branch Point Sequence:
TCTTGTTTTACA
Flanking Amino Acid:
DWSDQVDVTKMSVVMIVMFL
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
68.2
0.45
1.5
77.7
37.1
Major PPT
88.7
0.87
0.7
83.2
31.9
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
55
0.15
2.1
70.62
41.9

Associated Gene:

Gene:
RRH
Ensembl Gene ID:
ENSAPLG00000010998
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011466
5632649 - 5642746
10098