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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5641857_5642640_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5641857 - 5642640
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CCTTTCTGATTT
Flanking Amino Acid:
NPCIYVIANKKFRRAILAMV
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
87
0.83
0.7
84.9
29.9
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
50.8
0.1
1.7
67.65
44

Associated Gene:

Gene:
RRH
Ensembl Gene ID:
ENSAPLG00000010998
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011466
5632649 - 5642746
10098