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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56432803_56433505_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56432803 - 56433505
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCAAGAG
5'SS Class:
major
3'SS Sequence:
TCTCCATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTTTCTCACTA
Flanking Amino Acid:
DAEESGQTSEVSVDKETPEE
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1
55.6
37.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
83.8
0.76
0.8
80.9
29.8
Minor 5ss
22.6
-3.2
3.3
28.5
43.8
Minor BPS
53.5
0.1
1.8
67.75
39.1

Associated Gene:

Gene:
MGARP
Ensembl Gene ID:
ENSAPLG00000025584
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019637
56428857 - 56452391
23535