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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56445748_56450393_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
56445748 - 56450393
Intron Length:
4646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCGA
5'SS Class:
major
3'SS Sequence:
AAATCCTTAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AAATCCTTAAAA
Flanking Amino Acid:
GRKSSYRSGKGDEEETAEAA
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
65
42.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
54
0.09
1.1
53.9
39.5
Minor 5ss
27.7
-2.6
2.7
23.9
36.9
Minor BPS
72.6
0.71
1.3
73.97
36.5

Associated Gene:

Gene:
MGARP
Ensembl Gene ID:
ENSAPLG00000025584
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019637
56428857 - 56452391
23535