About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56451690_56452306_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56451690 - 56452306
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTACGGATG
5'SS Class:
major
3'SS Sequence:
ACGTTTTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTATCAATAACG
Flanking Amino Acid:
PSAAGRLQHRAPLRQMSSGS
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.52
1.1
64.9
46.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
77.2
0.61
0.9
69.7
41
Minor 5ss
35.3
-1.7
3.5
48.7
47.2
Minor BPS
52.2
-0
2
62.77
44.4

Associated Gene:

Gene:
MGARP
Ensembl Gene ID:
ENSAPLG00000025584
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019637
56428857 - 56452391
23535