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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56461743_56474136_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56461743 - 56474136
Intron Length:
12394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTCTTCAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTCTTCAACA
Flanking Amino Acid:
VVLKGCITHQRCYEHKQYRN
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80.7
33.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
84.5
0.78
0.8
81.6
28.9
Minor 5ss
37.7
-1.4
3.1
50.6
40.3
Minor BPS
78.6
0.89
1.4
87.68
29.9

Associated Gene:

Gene:
NAA15
Ensembl Gene ID:
ENSAPLG00000006263
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014568
56461692 - 56498403
36712