Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56475217_56475901_F

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

56475217 - 56475901

Intron Length:

685

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTATCCTTT

5'SS Class:

strong_minor

3'SS Sequence:

CAGAGTTTTCCAG|G

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

TCCTTAA

U12 Branch Point Sequence:

GCATCCTTAACA

Flanking Amino Acid:

GLRNDLKSHVCWHVYGLLQR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.8

0.21

1.3

64.4

42.3

Major BPS

69.7

0.49

59.9

38.5

Major PPT

68.3

0.41

57.6

Minor 5ss

98.3

1.62

0.6

94.6

16.9

Minor BPS

79.4

0.92

1.2

77.27

39.3

Associated Gene:

Gene:

NAA15

Ensembl Gene ID:

ENSAPLG00000006263

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006545

56474137 - 56499225

25089

ENSAPLT00000014568

56461692 - 56498403

36712