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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56483817_56484476_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56483817 - 56484476
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTATAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TAATTTTCATTT
Flanking Amino Acid:
LFLVKAKIYKHAGNIKEAAR
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
100
1.24
0.5
100
0
Major PPT
67.5
0.39
1.2
72.7
41.5
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
48.4
-0
1.7
65.58
39.5

Associated Gene:

Gene:
NAA15
Ensembl Gene ID:
ENSAPLG00000006263
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006545
56474137 - 56499225
25089
ENSAPLT00000014568
56461692 - 56498403
36712