Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56529999_56530182_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56529999 - 56530182

Intron Length:

184

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

CTTACCCACACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

CTTTCCTTACCC

Flanking Amino Acid:

QALEMVCAVQSPGDRIFNFP

Intron Amino Acid Position:

263

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.77

0.9

80.3

26.9

Major BPS

81.8

0.79

1.1

34.5

Major PPT

68.4

0.41

0.9

61.7

33.8

Minor 5ss

32.3

-2

2.7

33.9

Minor BPS

75.1

0.77

1.6

82.21

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027541

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021328

56528557 - 56534773

6217

ENSAPLT00000007193

56529895 - 56534101

4207