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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56532136_56532803_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
56532136 - 56532803
Intron Length:
668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTCCTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTCCTTTAATT
Flanking Amino Acid:
FSSQRKNPILVNVLIAASII
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.3
71.5
41.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
84.9
0.78
0.8
80.4
30.5
Minor 5ss
54.7
0.16
2.7
74.2
36.2
Minor BPS
76.8
0.92
1.1
84.98
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027541
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021328
56528557 - 56534773
6217