Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56532864_56533654_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56532864 - 56533654

Intron Length:

791

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGGCTG

5'SS Class:

major

3'SS Sequence:

TTCTGGTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTACCAA

U12 Branch Point Sequence:

CAGTTACCAACT

Flanking Amino Acid:

RTRAPVWAGMVMGVPGVLAL

Intron Amino Acid Position:

150

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

62.2

43.8

Major BPS

56.4

0.16

1.3

67.1

39.2

Major PPT

79.2

0.66

0.9

72.9

37.4

Minor 5ss

29.1

-2.4

3.3

35.3

42.3

Minor BPS

-0.4

59.06

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027541

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021328

56528557 - 56534773

6217