About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5653729_5654816_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5653729 - 5654816
Intron Length:
1088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAATAG
5'SS Class:
major
3'SS Sequence:
TGTTTTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTCTTTATAACG
Flanking Amino Acid:
RSDNIPVNYTVIQETPGEGV
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1
63.7
37.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.3
0.88
0.7
84.3
30.8
Minor 5ss
42.7
-0.8
3
55.2
49
Minor BPS
53.4
-0
1.7
58.99
43.4

Associated Gene:

Gene:
LRIT3
Ensembl Gene ID:
ENSAPLG00000030537
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042329
5645913 - 5656843
10931