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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56541408_56541694_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56541408 - 56541694
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGGAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGCAAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCAAA
U12 Branch Point Sequence:
TTGCCTTGCAAA
Flanking Amino Acid:
YNGVRITHQEVDSRDWALNG
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
33.5
Major BPS
52.6
0.06
1.4
62.7
41.6
Major PPT
60.5
0.24
1
52.4
40.7
Minor 5ss
27.9
-2.5
3.5
37.1
47.5
Minor BPS
45.1
-0.3
2
58.86
40.7

Associated Gene:

Gene:
SETD7
Ensembl Gene ID:
ENSAPLG00000007008
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007272
56540111 - 56546370
6260