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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56541813_56542814_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56541813 - 56542814
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CAGTCACTAATT
Flanking Amino Acid:
ALLPDPYESERVYVDVSLIS
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
81.8
38.5
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
87.2
0.84
0.6
85.9
21.1
Minor 5ss
43.9
-0.7
3.2
65.5
45.8
Minor BPS
49.2
0.02
2
67.07
43.6

Associated Gene:

Gene:
SETD7
Ensembl Gene ID:
ENSAPLG00000007008
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007272
56540111 - 56546370
6260