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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56542897_56544545_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56542897 - 56544545
Intron Length:
1649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTCCA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTATTTTGATT
Flanking Amino Acid:
GKPQFEVVPGSPVYSFDKST
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
65.7
40.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
87.7
0.85
0.6
81.3
30.7
Minor 5ss
36.7
-1.5
2.9
48.4
41.1
Minor BPS
68.2
0.65
1.2
82.69
32.4

Associated Gene:

Gene:
SETD7
Ensembl Gene ID:
ENSAPLG00000007008
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007272
56540111 - 56546370
6260