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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56575690_56577242_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56575690 - 56577242
Intron Length:
1553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTCCCGTTAATC
Flanking Amino Acid:
LWITGWFFNQEVAAVLGLLY
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
75.1
41.1
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
88.2
0.86
0.6
88.7
20.6
Minor 5ss
40.5
-1.1
3.1
57.9
46.4
Minor BPS
59.2
0.27
2.1
71.44
40.3

Associated Gene:

Gene:
MGST2
Ensembl Gene ID:
ENSAPLG00000007262
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007537
56570613 - 56580809
10197