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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56577325_56580577_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56577325 - 56580577
Intron Length:
3253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTACTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
ACTTTTCTACTT
Flanking Amino Acid:
FHGYAQSVKGRLTGFYLSLI
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
82.2
0.72
0.8
74.6
35.2
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
47.4
-0.1
1.9
65.66
40

Associated Gene:

Gene:
MGST2
Ensembl Gene ID:
ENSAPLG00000007262
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007537
56570613 - 56580809
10197