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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56587162_56590509_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56587162 - 56590509
Intron Length:
3348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCTTTCTTAACC
Flanking Amino Acid:
YPLQQVNQFQGSPQDIAAVR
Intron Amino Acid Position:
753

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
75.7
32.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
76.2
0.59
0.9
72.9
37.4
Minor 5ss
34.3
-1.8
3.6
49.9
46.6
Minor BPS
84.8
1.07
1
85.68
32.7

Associated Gene:

Gene:
MAML3
Ensembl Gene ID:
ENSAPLG00000007272
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007541
56585225 - 56781405
196181