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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56651533_56780976_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56651533 - 56780976
Intron Length:
129444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
TTTTCTTTTAAG
Flanking Amino Acid:
AEQRNHTLIMLQETVKRKLE
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
68.5
36.3
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
81.9
0.72
0.9
86.8
24.5
Minor 5ss
29.6
-2.3
3.5
35.6
42.2
Minor BPS
62.7
0.26
1.8
72.54
40

Associated Gene:

Gene:
MAML3
Ensembl Gene ID:
ENSAPLG00000007272
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007541
56585225 - 56781405
196181