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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56832780_56834981_R

Intron Information:

Intron Rank:
129064
Intron Class:
major
Intron Phase:
Intron Coordinates:
56832780 - 56834981
Intron Length:
2202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
AATTCTTAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TAATTCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.7
31.8
Major BPS
100
1.24
0.5
100
0
Major PPT
63.1
0.3
1
57
42.7
Minor 5ss
31.7
-2.1
2.6
35.1
34.5
Minor BPS
83.3
1.12
1
90.03
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016583
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024572
56819370 - 56835883
16514