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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56837714_56842796_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56837714 - 56842796
Intron Length:
5083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
AGCTGCTCACCG
Flanking Amino Acid:
FTNISLADDSERRSGRRRPA
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
75.5
0.57
0.7
69.5
24.3
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
42.5
-0.7
2.2
46.49
46.1

Associated Gene:

Gene:
SCOC
Ensembl Gene ID:
ENSAPLG00000023909
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038282
56837650 - 56843741
6092