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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56843050_56843598_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56843050 - 56843598
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGCAGT
5'SS Class:
major
3'SS Sequence:
ATCACCTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
CTTCTTATAATA
Flanking Amino Acid:
QVLELQHTLEDLSARVDAVK
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.2
73.9
42.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
76.5
0.6
0.9
69.5
36
Minor 5ss
37.5
-1.4
2.8
50
45.9
Minor BPS
53
0.09
1.6
64.77
36

Associated Gene:

Gene:
SCOC
Ensembl Gene ID:
ENSAPLG00000023909
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038282
56837650 - 56843741
6092