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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56848908_56850636_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56848908 - 56850636
Intron Length:
1729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAGAT
U12 Branch Point Sequence:
TAGTGCTGAAGT
Flanking Amino Acid:
KSNKSGSEDEMKEDDESISS
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
23.3
Major BPS
67.4
0.43
1.1
63.4
42.8
Major PPT
94.3
1
0.5
93.3
15.5
Minor 5ss
37.4
-1.4
2.9
50.4
46
Minor BPS
48.8
-0
2.2
69.89
46.6

Associated Gene:

Gene:
CLGN
Ensembl Gene ID:
ENSAPLG00000007372
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007664
56848827 - 56872201
23375