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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56850747_56853240_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56850747 - 56853240
Intron Length:
2494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGGA
5'SS Class:
major
3'SS Sequence:
ATTTGTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTAAAATTAATT
Flanking Amino Acid:
QKMEREASPSEDEGEGVEDI
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
57
42.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81
0.7
0.8
74.5
35.8
Minor 5ss
27.6
-2.6
3.6
38.7
46.4
Minor BPS
50.3
0.09
1.8
69.3
40.8

Associated Gene:

Gene:
CLGN
Ensembl Gene ID:
ENSAPLG00000007372
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007664
56848827 - 56872201
23375