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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56853319_56855659_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56853319 - 56855659
Intron Length:
2341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
TCTTCTATGATT
Flanking Amino Acid:
EKDNEDIVEDERREPEETKG
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
36.3
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
85.3
0.79
0.8
80
32.2
Minor 5ss
37.4
-1.4
3
44.6
45.1
Minor BPS
62.5
0.47
1.6
79.45
37.2

Associated Gene:

Gene:
CLGN
Ensembl Gene ID:
ENSAPLG00000007372
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007664
56848827 - 56872201
23375