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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56856105_56857501_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56856105 - 56857501
Intron Length:
1397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAAACT
5'SS Class:
major
3'SS Sequence:
TTTTTAAATGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCCTTTTTAAAT
Flanking Amino Acid:
LKKLVASANEPGMFSQLVTA
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
73.2
35.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.4
0.59
0.9
72.3
37
Minor 5ss
41.6
-0.9
3
58.8
45.4
Minor BPS
66.4
0.59
1.4
75.95
41.3

Associated Gene:

Gene:
CLGN
Ensembl Gene ID:
ENSAPLG00000007372
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007664
56848827 - 56872201
23375