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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56859183_56859826_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56859183 - 56859826
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TTGTTTGTAACT
Flanking Amino Acid:
PDPNAKKPKDWDEEMDGEWE
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
88.3
0.86
0.6
85.2
22.2
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
62.3
0.47
2
82.67
39.4

Associated Gene:

Gene:
CLGN
Ensembl Gene ID:
ENSAPLG00000007372
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007664
56848827 - 56872201
23375