About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56859941_56860567_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56859941 - 56860567
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGGGCA
5'SS Class:
major
3'SS Sequence:
TCTGTAATTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TATTTTCTAACA
Flanking Amino Acid:
PDPNAVKPDDWDEDEPSKIE
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
59.4
39.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
65.8
0.36
1.1
65.3
39.3
Minor 5ss
28.3
-2.5
3.7
35
43.6
Minor BPS
65.6
0.49
1.6
76.8
33.7

Associated Gene:

Gene:
CLGN
Ensembl Gene ID:
ENSAPLG00000007372
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007664
56848827 - 56872201
23375