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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56862904_56865612_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56862904 - 56865612
Intron Length:
2709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
TTTGCTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACGCAT
U12 Branch Point Sequence:
TTTGCTTCTACA
Flanking Amino Acid:
LLSSSNDLNLEYFFDKTPYT
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.8
40.4
Major BPS
53.4
0.08
1.3
63.4
35.6
Major PPT
86.1
0.81
0.8
80.4
31.7
Minor 5ss
43.1
-0.8
2.8
56.7
41.7
Minor BPS
52.6
0.07
2
71.31
40.9

Associated Gene:

Gene:
CLGN
Ensembl Gene ID:
ENSAPLG00000007372
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007664
56848827 - 56872201
23375