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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56868414_56870707_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56868414 - 56870707
Intron Length:
2294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCTGC
5'SS Class:
major
3'SS Sequence:
ATTCTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ATGTAGTTAAAT
Flanking Amino Acid:
FTETFDGVLTGWILSKTKKE
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1.1
64.1
43.4
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
79.4
0.66
0.9
77.6
36.1
Minor 5ss
43.8
-0.7
2.8
50.7
46
Minor BPS
49.3
0.02
2.3
72.78
43.6

Associated Gene:

Gene:
CLGN
Ensembl Gene ID:
ENSAPLG00000007372
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007664
56848827 - 56872201
23375