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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56883595_56883707_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56883595 - 56883707
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAC
U12 Branch Point Sequence:
TTCTTTGTTACA
Flanking Amino Acid:
NTTVEVLLADEAESKGLLDN
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
47.8
-0.1
1
53.1
30.9
Major PPT
87.9
0.85
0.8
83.2
32
Minor 5ss
41.2
-1
3.1
58.3
39.3
Minor BPS
47.6
-0.2
2.2
65.81
41.1

Associated Gene:

Gene:
MGAT4D
Ensembl Gene ID:
ENSAPLG00000007550
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007871
56881574 - 56916152
34579