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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56883787_56885248_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56883787 - 56885248
Intron Length:
1462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CTTTTTTCATCA
Flanking Amino Acid:
FTFLKPLKVEKYFFRSGNIE
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
85.1
0.79
0.8
85.8
27.1
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
51.5
0.04
1.8
66.49
40.6

Associated Gene:

Gene:
MGAT4D
Ensembl Gene ID:
ENSAPLG00000007550
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007871
56881574 - 56916152
34579