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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56891332_56895459_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56891332 - 56895459
Intron Length:
4128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGCAAA
U12 Branch Point Sequence:
AAGCCACCACCT
Flanking Amino Acid:
AQPKGTFYLQLEDDIIAKPD
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
29.7
Major BPS
44.5
-0.3
1.2
46.5
34.4
Major PPT
86.7
0.83
0.8
80.5
37
Minor 5ss
46.6
-0.4
2.4
59.3
45.3
Minor BPS
37.2
-0.9
2
51.9
41.7

Associated Gene:

Gene:
MGAT4D
Ensembl Gene ID:
ENSAPLG00000007550
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007871
56881574 - 56916152
34579