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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56895536_56896889_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56895536 - 56896889
Intron Length:
1354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTATATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
ATTTTCAGAATT
Flanking Amino Acid:
KTLGDSEDRVRWRTKQNLDY
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
72.3
0.5
0.9
70.8
39.2
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
59.1
0.36
1.7
80.09
35.4

Associated Gene:

Gene:
MGAT4D
Ensembl Gene ID:
ENSAPLG00000007550
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007871
56881574 - 56916152
34579