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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56901372_56902567_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56901372 - 56902567
Intron Length:
1196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAGAC
U12 Branch Point Sequence:
TTTTCTTTTCTT
Flanking Amino Acid:
NVIVGQQRTGVSLVMGIPTV
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
57.5
0.19
1.1
55.1
40.5
Major PPT
92.4
0.95
0.6
88.1
21.7
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
MGAT4D
Ensembl Gene ID:
ENSAPLG00000007550
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007871
56881574 - 56916152
34579