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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56902703_56906103_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56902703 - 56906103
Intron Length:
3401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTATG
5'SS Class:
major
3'SS Sequence:
ATGTTTCTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTTCTTTAAG
Flanking Amino Acid:
KRMNSTTNHTDDEKVLNLTR
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
75.6
40
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.7
0.51
1.1
76.4
37.4
Minor 5ss
41.8
-0.9
2.5
51.4
45.2
Minor BPS
56.3
0.05
1.8
65.09
42.3

Associated Gene:

Gene:
MGAT4D
Ensembl Gene ID:
ENSAPLG00000007550
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007871
56881574 - 56916152
34579